By Burcu Bakir, Osman Ugur Sezerman (auth.), Franz Rothlauf, Jürgen Branke, Stefano Cagnoni, Ernesto Costa, Carlos Cotta, Rolf Drechsler, Evelyne Lutton, Penousal Machado, Jason H. Moore, Juan Romero, George D. Smith, Giovanni Squillero, Hideyuki Takagi (eds

This booklet provides the refereed joint complaints of 7 workshops on evolutionary computing, EvoWorkshops 2006, held in Budapest in April 2006. sixty five revised complete papers and thirteen revised brief papers provided have been conscientiously reviewed and chosen from a complete of 149 submissions. The booklet is prepared in topical sections together with evolutionary bioinformatics, evolutionary computation in communications, networks, and attached structures, and more.

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Extra info for Applications of Evolutionary Computing: EvoWorkshops 2006: EvoBIO, EvoCOMNET, EvoHOT, EvoIASP, EvoINTERACTION, EvoMUSART, and EvoSTOC, Budapest, Hungary, April 10-12, 2006. Proceedings

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Generally, the different basis sequences determine different genes, which are large DNA fragments, carry and transmit genetic information. The smaller DNA pieces are called oligo–nucleotides. Energetically favorable, if dA bonds to dT and dC pairs with dG, which means there exists a one to one correspondence in the set of DNA fragments. There is another important bijective function f: DNA –> RNA, which is based on similar chemically preferred pairs, dArU, dTrA, dCrG and dGrC where RNA fragments are variations with repetitive rA, rU, rC and rG elements.

Edge-counting and information content approaches were implemented to measure similarity between genes products based on the GO. Edge-counting approach calculates the distance between the nodes associated with these terms in a hierarchy. The shorter the distance, the higher the similarity. The limitation is that it heavily relies on the idea that nodes and links in the GO are uniformly distributed. The research applies two methods for calculating cluster validity indices. The first approach process overall similarity values, which are calculated by taking into account the combined annotations originating from the three GO hierarchies.

In fact, the 26 K. Danyi, G. Kókai, and J. Csontos Fig. 2. The simplified scheme of DNA–chip investigation probability of hybridization and the Tm –point are descriptors of the same thermodynamical property: the stability of the duplex. The higher the Tm the more likely hybridization occurs. ) and empirical parameters are accounted for solvation effects (eq. ). Td = 2(#A + #T) + 4(#C + #G) (1) where #X means the number of X bases in the sequence. 62F (2) where L, F are empirical parameters, XG , XC can be simply calculated from #G and #C.

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